Despite the fact that the DVD is also the Canadian print, the YTV version of "Something Smells" is shown instead of the Nickelodeon version. In all U.S. airings, SpongeBob walks up to a building and says "Hi, building!" which causes the building to flee from SpongeBob's breath. He goes up to Patrick and says "I just don't get it!" and Patrick says "I don't either." In the VHS/DVD releases, as well as all YTV airings, the scene goes like this:
SpongeBob: (walks up to a building and waves) I just don't get it! (the building flees)
Patrick: (offscreen) I don't, either. (SpongeBob walks up to Patrick; the rest of the scene goes as normal, resulting in the same lines being repeated). (According to the commentary, this was a sound mixing error when the Season 2 DVD was made.)
On one of the alternative backings of the set, Plankton is shown to have carved a shape of himself in SpongeBob's pineapple with a saw and is about to break in.
In the "Christmas Who?" episode on disc 1, they removed the part where Patchy the Pirate says "It's about time you came back. Now I can finish me story" due to the DVD version of the episode having no commercials. Here is what it's like on this DVD and airings on television:
Patchy: Is Squidward right? Can they're be a Christmas under the sea? Stay tuned. (Makes a sad face. Scene fades to black, then fades to a SpongeBob Christmas decoration.) So, SpongeBob was sending the last of the letters to Santa. (The rest of the episode goes normal)
Airings on TV
Patchy: Is Squidward right? Can they're be a Christmas under the sea? Stay tuned. (Makes a sad face. Scene fades to black, then fades to Patchy again.) It's about time you got back! (Holds up a SpongeBob Christmas decoration) Now I can finish me story! (Scene cuts close to the decoration) So, SpongeBob was sending the last of the letters to Santa. (The rest of the episode goes normal.)
In the Disc 2 episode description of "Bubble Buddy" states, "With Patrick out of town..." However, in the episode, Patrick's note just says that he has gone to get more giant paper. Plus, SpongeBob went to Squidward and Sandy, too. He didn't only check on Patrick.