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In "Valentine's Day," SpongeBob blew a heart bubble from a chocolate bottle to give to Sandy. Apparently, SpongeBob's gift to Patrick was a giant chocolate bubble as a hot air balloon.
In "Suds," SpongeBob gets the Suds, a sickness that causes him to blow bubbles out of his holes.
In "Wormy," SpongeBob and Patrick blow a bubble to encase the newly-transformed Wormy, who had just become a butterfly. This allows him to survive in the water.
Atlantis's prized possession, the oldest-living bubble has been desired by SpongeBob and Patrick to take the picture of the bubble. They took the picture of the bubble, and though they popped it, it wasn't the real bubble. The real bubble was under LRH's possession. After Patrick took a picture of it, the bubble popped and LRH summoned his guards to seize them. Fortunately for him, Plankton became the replacement of the bubble.
SpongeBob & Patrick made bubbles from a bottle of spicy sauce in "Bubble Troubles."
In "It Came from Goo Lagoon," several goo bubbles came up from Goo Lagoon. SpongeBob, Patrick, and every other Bikini Bottomite misinterpret the substance to their uses. Sandy warns that the goo bubbles could be dangerous, where they initially disregard her. Upon hearing this, Plankton plans on using a large one for his needs and uses his submarine to find it. After, Plankton vows that he will pop the bubble down to Bikini Bottom if he does not have the formula. Despite various attempts from the gang to end his scheme, Plankton manages to keep the bubble long enough. Mr. Krabs then gives Plankton a fake formula, where the tiny cyclops pops the bubble to them. After Plankton's defeat, Mr. Krabs profitably cleans everyone up with the Bubble Man created by SpongeBob.